Genomic Regions




Region: atpF-atpH (ATPase I subunit – ATPase III subunit)

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 13387 - 13888

Length(bp): 502

Reference sequence:
GTATTAAACCCGAAACTCCCGGCAGATGGCCAGTGGCCCAAAGAAACGAA AGAATCGGTTACGTTTTTCATATGATCTCCTCTTATAGATAGACTAAAAA ATCGAACAGAGTTCTTTTTGTAGCACTTCGCCCCTCTTTTTATTTATTCT TTTATTTTTTCTGAAATTGAGTCAAAAAATAAAAAATATTCGAGTTAGTT ATAAATTATGAACTAATGAACTAGCCCTTTTATTGGTTATTGGAACACTA ACACTTACTAAAAAGAGTTTCCCTTGGTCTATGAACGGGAAGGATGAAAG CGAGTCAGTATGCTAATTCCTCATCCGCAAATCAGCCCTTCCCGTAGGTT CTTTTCTCAAAGAATAAAGAATTGGAGGAGGGAAATCTTGATAGAATTTG AAAAAGCAAACGACAAGTCGAAGGCAATAAAATATGAAAAATGTATTTAT TTTTCATATTTCTAAGCTAAGATTAAACAAAAGGATTCGCAAATAAAAGT

Data in PlantAligDB:


Total number of sequences: 1025

Number of families: 31

Families:
Apiaceae
Araceae
Araucariaceae
Asparagaceae
Asteraceae
Brassicaceae
Campanulaceae
Colchicaceae
Cupressaceae
Cyperaceae
Fissidentaceae
Iridaceae
Liliaceae
Melanthiaceae
Melastomataceae
Moraceae
Musaceae
Orchidaceae
Paniaceae
Pinaceae
Plantaginaceae
Poaceae
Primulaceae
Ranunculaceae
Rosaceae
Salicaceae
Violaceae
Zamiaceae
Zingiberaceae



Region: psbA-trnH (Photosystem II 32 kDa protein – tRNA-His (GUG))

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 62 – 570

Length(bp): 509

Reference sequence:
CCACTTGGCTACATCCGCCCCCTCGCCTACTTACATTCCGTTTTTACATT ATTTAAATTAGAAAACAAAAGATTCAAGTTCGAATATAGCTCTTCTTTCT TATTTCAATGATATTATTATTTCAAAGATAAGAGATATTCAAAGATAAGA GATAAGAAGAAGTCAAAATTTGATTTTTTTTTTGGAAAAAAAAAATCAAA AAGATATAGTAACATTAGCAAGAAGAGAAACAAGTTCTATTTCTACAATT TTAAACAAATACAAAATCAAAATAGAATACTCAATCATGAATAAATGCAA GAAAATAACCTCTCCTTCTTTTTCTATAATGTAAACAAAAAAGTCTATGT AAGTAAAATACTAGTAAATAAATAAAAAGAAAAAAAGAAAGGAGCAATAG CACCCTCTTGATAGAACAAGAAAATGATTATTGCTCCTTTCTTTTCAAAA CCTCCTATAGACTAGGCCAGGATCTTATCCATTTGTAGATGGAGCTTCGA

Data in PlantAligDB:


Total number of sequences: 4852

Number of families: 79

Families:
Acanthaceae
Aceraceae
Adoxaceae
Alismataceae
Annonaceae
Apiaceae
Apocynaceae
Araliaceae
Arecaceae
Aspleniaceae
Asteraceae
Betulaceae
Boraginaceae
Brassicaceae
Bursecaceae
Cactaceae
Caprifoliaceae
Celastraceae
Colchiaceae
Combretaceae
Convolvulaceae
Cornaceae
Cucurbitaceae
Cupressaceae
Cyperaceae
Dicranaceae
Dioscoreaceae
Ephedraceae
Escalloniaceae
Fabaceae
Fagaceae
Fissidentaceae
Frullaniaceae
Gentianaceae
Gesneriaceae
Grossulariaceae
Hamamelidaceae
Hyacinthaceae
Hydrangeaceae
Hymenophyllaceae
Iridaceae
Jamesoniellaceae
Junglandaceae
Lamiaceae
Lauraceae
Lejeuneaceae
Linaceae
Loasaceae
Loranthaceae
Magnoliaceae
Melastomataceae
Moraceae
Myrtaceae
Oleaceae
Orchidaceae
Orobanchaceae
Orthotrichaceae
Pallaviciniaceae
Passifloraceae
Penaeaceae
Pinaceae
Piperaceae
Poaceae
Polygonaceae
Potamogetonaceae
Pottiaceae
Primulaceae
Pteridaceae
Ranunculaceae
Rosaceae
Rubiaceae
Salicaceae
Saxifragaceae
Solanaceae
Sphagnaceae
Tamaricaceae
Veroniceae
Violaceae
Vitaceae



Region: trnL (tRNA-Leu (UAA))

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 49312 - 49888

Length(bp): 577

Reference sequence:
CGAAATCGGTAGACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAA ACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAATTAACAAA AATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAACAAAGGTTC AGAAAAAAAGGATAGGTGCAGAGACTCAATGGAAGCTATTCTAACAAATG GAGTTAAATGCGTTGGTAGAGGAATCTTTACATCGAAACTTCAGAAAGAA AAAGAATGAAGTGAAGGATAAACGTATATACATACGTATTGAATACTATA TCAAAATCAAATGATTAATGATGACCCGAATCTGTATTTTTTCTATAAAA AATAGAAGAATTGGTGTGAATCGATTCTACATTGAAGAAAGAATCGAATA TTCATTGATCAAACCATTCACTCCATAGTCTGATAGATCTTTTGAAGAAC TGATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATAC CGGCAACAATGAAATTTATCGTAAGAGGAAAATCCGTCGACTTTAAAAAT

Data in PlantAligDB:


Total number of sequences: 2527

Number of families: 44

Families:
Amaryllidaceae
Annonaceae
Apocynaceae
Araceae
Asteraceae
Boraginaceae
Brassicaceae
Burseraceae
Cactaceae
Caryophyllaceae
Cephalotaxaceae
Cyatheaceae
Ericaceae
Eriocaulaceae
Euphorbiaceae
Fabaceae
Gesneriaceae
Gnetaceae
Goodeniaceae
Iridaceae
Juncaceae
Lamiaceae
Liliaceae
Magnoliaceae
Malvaceae
Melanthiaceae
Oleaceae
Orchidaceae
Orobanchaceae
Pinaceae
Poaceae
Polygonaceae
Rosaceae
Rubiaceae
Rutaceae
Salicaceae
Saxifragaceae
Scrophulariaceae
Solanaceae
Stilbaceae
Taxaceae
Theaceae
Verbenaceae
Vitaceae



Region: trnL (tRNA-Leu (UAA))

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 49415 - 49492

Length(bp): 78

Reference sequence:
GGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAACAAAGGTTCAGA

Data in PlantAligDB:


Total number of sequences: 34674

Number of families: 173

Families:
Acanthaceae
Aceraceae
Actinidiaceae
Adoxaceae
Aizoaceae
Amaranthaceae
Amaryllidaceae
Anacardiaceae
Annonaceae
Apiaceae
Apocynaceae
Aquifoliaceae
Araceae
Araliaceae
Arecaceae
Aristolochiaceae
Asparagaceae
Asteliaceae
Asteraceae
Begoniaceae
Berberidaceae
Betulaceae
Bignoniaceae
Boraginaceae
Brassicaceae
Bromeliaceae
Burseraceae
Cactaceae
Calceolariaceae
Calycanthaceae
Campanulaceae
Canellaceae
Cannabaceae
Capparaceae
Caprifoliaceae
Caricaceae
Caryophyllaceae
Celastraceae
Cephalotaxaceae
Chloranthaceae
Chrysobalanaceae
Clethraceae
Clusiaceae
Colchicaceae
Convolvulaceae
Coriariaceae
Cornaceae
Costaceae
Crassulaceae
Cucurbitaceae
Cunoniaceae
Cupressaceae
Cyperaceae
Dioscoreaceae
Dipterocarpaceae
Ebenaceae
Elaeagnaceae
Elaeocarpaceae
Ephedraceae
Ericaceae
Euphorbiaceae
Fabaceae
Fagaceae
Gentianaceae
Geraniaceae
Gesneriaceae
Goodeniaceae
Haemodoraceae
Hamamelidaceae
Hyacinthaceae
Hydrangeaceae
Hypoxidaceae
Iridaceae
Isoetaceae
Juglandaceae
Juncaceae
Lamiaceae
Lardizabalaceae
Lauraceae
Lecythidaceae
Lentibulariaceae
Liliaceae
Limnanthaceae
Linaceae
Loasaceae
Loganiaceae
Loranthaceae
Lowiaceae
Lycopodiaceae
Lygodiaceae
Lythraceae
Magnoliaceae
Malpighiaceae
Malvaceae
Marantaceae
Maratticaceae
Marcgraviaceae
Melanthiaceae
Meliaceae
Melianthaceae
Menispermaceae
Moraceae
Musaceae
Myodocarpaceae
Myricaceae
Myristicaceae
Myrtaceae
Nartheciaceae
Nepenthaceae
Nothogaceae
Nymphaeaceae
Ochnaceae
Oleaceae
Onagraceae
Orchidaceae
Orobanchaceae
Osmundaceae
Oxalidaceae
Pandanaceae
Papaveraceae
Passifloraceae
Pentaphylacaceae
Phrymaceae
Piperaceae
Pittosporaceae
Plantaginaceae
Plumbaginaceae
Poaceae
Podocarpaceae
Podostemaceae
Polemoniaceae
Polygalaceae
Polygonaceae
Potamogetonaceae
Primulaceae
Proteaceae
Pteridaceae
Ranunculaceae
Restionaceae
Rhamnaceae
Rosaceae
Rubiaceae
Rutaceae
Salicaceae
Sapindaceae
Sapotaceae
Saxifragaceae
Schisandraceae
Scrophulariaceae
Simaroubaceae
Smilacaceae
Solanaceae
Stachyuraceae
Stilbaceae
Styracaceae
Symplocaceae
Taxaceae
Theaceae
Thesiaceae
Thymelaeaceae
Tofieldiaceae
Typhaceae
Ulmaceae
Urticaceae
Velloziaceae
Verbenaceae
Violaceae
Vitaceae
Winteraceae
Xanthorrhoeaceae
Zamiaceae
Zingiberaceae
Zygophyllaceae



Region: rbcL (rubisco large subunit)

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 57600 - 59033

Length(bp): 1434

Reference sequence:
ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGT TAAAGAGTACAAATTGACTTATTATACTCCTGAGTACCAAACCAAGGATA CTGATATATTGGCAGCATTCCGAGTAACTCCTCAACCTGGAGTTCCACCT GAAGAAGCAGGGGCCGCGGTAGCTGCCGAATCTTCTACTGGTACATGGAC AACTGTATGGACCGATGGACTTACCAGCCTTGATCGTTACAAAGGGCGAT GCTACCGCATCGAGCGTGTTGTTGGAGAAAAAGATCAATATATTGCTTAT GTAGCTTACCCTTTAGACCTTTTTGAAGAAGGTTCTGTTACCAACATGTT TACTTCCATTGTAGGTAACGTATTTGGGTTCAAAGCCCTGCGCGCTCTAC GTCTGGAAGATCTGCGAATCCCTCCTGCTTATGTTAAAACTTTCCAAGGT CCGCCTCATGGGATCCAAGTTGAAAGAGATAAATTGAACAAGTATGGTCG TCCCCTGTTGGGATGTACTATTAAACCTAAATTGGGGTTATCTGCTAAAA ACTACGGTAGAGCTGTTTATGAATGTCTTCGCGGTGGACTTGATTTTACC AAAGATGATGAGAACGTGAACTCACAACCATTTATGCGTTGGAGAGATCG TTTCTTATTTTGTGCCGAAGCACTTTATAAAGCACAGGCTGAAACAGGTG AAATCAAAGGGCATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATG ATCAAAAGAGCTGTATTTGCTAGAGAATTGGGCGTTCCGATCGTAATGCA TGACTACTTAACGGGGGGATTCACCGCAAATACTAGCTTGGCTCATTATT GCCGAGATAATGGTCTACTTCTTCACATCCACCGTGCAATGCATGCGGTT ATTGATAGACAGAAGAATCATGGTATCCACTTCCGGGTATTAGCAAAAGC GTTACGTATGTCTGGTGGAGATCATATTCACTCTGGTACCGTAGTAGGTA AACTTGAAGGTGAAAGAGACATAACTTTGGGCTTTGTTGATTTACTGCGT GATGATTTTGTTGAACAAGATCGAAGTCGCGGTATTTATTTCACTCAAGA TTGGGTCTCTTTACCAGGTGTTCTACCCGTGGCTTCAGGAGGTATTCACG TTTGGCATATGCCTGCTCTGACCGAGATCTTTGGGGATGATTCCGTACTA CAGTTCGGTGGAGGAACTTTAGGACATCCTTGGGGTAATGCGCCAGGTGC CGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTAAAAGCTCGTAATGAAG GACGTGATCTTGCTCAGGAAGGTAATGAAATTATTCGCGAGGCTTGCAAA TGGAGCCCGGAACTAGCTGCTGCTTGTGAAGTATGGAAAGAGATCGTATT

Data in PlantAligDB:


Total number of sequences: 1748

Number of families: 39

Families:
Amaryllidaceae
Aneuraceae
Annonaceae
Araceae
Arecaceae
Asparagaceae
Asteraceae
Begoniaceae
Caprifoliaceae
Celestraceae
Convolvulaceae
Cucurbitaceae
Cupressaceae
Cyatheaceae
Droseraceae
Ericaceae
Euphorbiaceae
Fagaceae
Hamamelidaceae
Hypnaceae
Lauraceae
Leucobryaceae
Linaceae
Malpighiaceae
Oleaceae
Orchidaceae
Orobanchaceae
Pinaceae
Piperaceae
Plagiotheciaceae
Poaceae
Polygonaceae
Pylaisiadelphaceae
Restionaceae
Sematophyllaceae
Simaroubaceae



Region: matK (maturase K)

Genome: chloroplast DNA

Reference: Nicotiana tabacum, NC_001879.2

Location in cpDNA reference sequence: 2131 - 3660

Length(bp): 1530

Reference sequence:
TCATTGATAATTCGCCAGATCATTGATACAAAAAATATCCAAATACCAAA TCCGACTTCTATATACTCCCCACAAACTAGAAGAAGCTCGTGGGAAGGTC AAAGAAAGAACTTGTTCTTCCGACGTTAAGAATTCTTCCAATAATTCCGA GCCCGATCTTTTCAAAAAAGTGCGTACAGTACTTTTGTGTTTCCGAGCTA AAGTTCTAGCACAAGAAAGTCGAAGTATATACTTTATTCGATATAAAGTC TTTTTTTTGGAAGATCCGCTATAATAATGAAAAAGATTTCTGCATATACG CCCAAATCGGTCAATAATATCAGAATCTGATAAATCGGACCAAACCGGTT TACTAATGGGATGCCCTAATACGGTACAAAAGTTTGCTTTAGCTAATGAT CCAATCAAAGGAATAATTGGAACAAGGGTATCGAACTTCTTAATTGCATT ATTGATTAGAAATGAATTTTCTAACATTTGACTACGTACCATTGAAGGAT TTAGTCGCACACTTGAAAGATAGCCCATAAAGTCACGGGAATGATTGGAT AATTGGTTTATATGGATCCTTCCTGTGTGAAAGCACAGAGAACAATGACA TTGCCAAAAATTGACAAGGTAAAATTTCCATTTATTCATCAAAAGAAACG TCCCTTTTGAAGCCAGAATGGATTTTCCTTGATACCTAACATAATGCATG AAAGGATCCTTGAATAACCATAGGGTAACCTGAAAATCCTTAGCAAAGAC TTCTACAAGACGTTCTATTTTTCCATAGAAATATATTCGTTCAAGAAGGG CTCCAAAAGATGTTGATCGTAAATGAGAAGATTGGTTCCGTAGAAAGACG AAAGTGGATTCGCATTCATATACATAAGAATTATATAAGAAGAAGAAGAA TCTTTGATTTTTTTTTGAAAAGGAGTAACCGGGCTTCTTTGAAGTAATAA GACTATTCAAATTCCAAAATTCATGGAGAAAGAATCGTAATAAATGTAAA GAAGAGGCATCTTTTACCCAATAGCGAAGAGTTTGAACCAAGATTTCCAG ATGAACAGGGTAGGGTATTAGTATATCTAATACATAATTTAGATGTGAAA AATTGTCCTCTAAAAAAGGAAATGTTGAATGAATTGATCGTAAATTATAA GATTTAAAAATCTTTTTGCCTTCGAAAGAAGATAAAGAAGATATTAATCG TAGAGAAAACGGAATTTCCACAATAAACGCAAATCCCTCTGATATCATTT GAGAATACAAACTCTTGTTGCACCCCAAAAATGAATTTTTGTTAGAATCA TTAGTAGAAATAAGAAAATGATTCTGTTGATACATTCGAGTAATTAAACG TTTCACAATTAGGAAACTTAATTTATTGTTATAACCTGGATTTTCCAACA AAATCGACCTATTTCTATTTAAACCATGATCATGAGCAAGTGCATAAATA TACTCCTGAAAGATAAGTGGATATAGGAAGTTGTGTTGTTGCGATCTATC

Data in PlantAligDB:


Total number of sequences: 11341

Number of families: 113

Families:
Actinidiaceae
Alismataceae
Amaranthaceae
Amaryllidaceae
Anacampserotaceae
Ancistrocladaceae
Annonaceae
Apocynaceae
Araceae
Araliaceae
Araucariaceae
Arecaceae
Aristolochiaceae
Asparagaceae
Asteraceae
Begoniaceae
Berberidaceae
Betulaceae
Boraginaceae
Brassicaceae
Bromeliaceae
Bruniaceae
Cactaceae
Campanulaceae
Capparaceae
Caprifoliaceae
Caryophyllaceae
Characeae
Cleomaceae
Colchicaceae
Cornaceae
Cupressaceae
Cycadaceae
Didiereaceae
Dioscoreaceae
Ebenaceae
Ephedraceae
Ericaceae
Euphorbiaceae
Fabaceae
Fagaceae
Gesneriaceae
Gnetaceae
Haloragaceae
Hamamelidaceae
Hippocastanaceae
Hyacinthaceae
Hydrangeaceae
Hydrocharitaceae
Iridaceae
Lamiaceae
Lauraceae
Lentibulariaceae
Leucobryaceae
Liliaceae
Linderniaceae
Loasaceae
Lythraceae
Magnoliaceae
Malpighiaceae
Malvaceae
Marantaceae
Melanthiaceae
Menyanthaceae
Montiaceae
Myristicaceae
Myrtaceae
Nartheciaceae
Nepenthaceae
Nymphaeaceae
Oleaceae
Orchidaceae
Orobanchaceae
Oxalidaceae
Paeoniaceae
Papaveraceae
Pentaphylacaceae
Phyllanthaceae
Pinaceae
Piperaceae
Plantaginaceae
Poaceae
Podocarpaceae
Podostemaceae
Polygonaceae
Primulaceae
Proteaceae
Ranunculaceae
Restionaceae
Rosaceae
Rubiaceae
Rutaceae
Sapindaceae
Sarraceniaceae
Saxifragaceae
Scrophulariaceae
Simaroubaceae
Solanaceae
Symplocaceae
Taxaceae
Theaceae
Tofieldiaceae
Violaceae
Xanthorrhoeaceae
Zamiaceae
Zingiberaceae



Region: ITS (internal transcribed spacer 1 - 5.8S rRNA - internal transcribed spacer 2)

Genome: nuclear DNA

Reference: Nicotiana tabacum, AJ300215.1

Location in cpDNA reference sequence: -

Length(bp): 678

Reference sequence:
GTGAACTGCGGAAGGTCATTGTCGAAACTGCAAGGCAGAACGACCGCGAA CTTGTTTAAAAACCGGGGAGCGGTGCGGCCGGGGCGCTTCGGCCTCCGTC CGCGCGGATCTCTCCCTATCCCCGGGGCGCTCGTTCGCGTGCGTGACGGG TGATTAACGAACCCCGGGGCGGAAAGCGCCAAGGAATACTAAATTGAAAG CCTGCCTCTCGCGCCCCGTCCGCGGTGCGCGCGGGGGACTTGTGCTTCTT TTGAAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGAT GAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGA ACCATCGAATCTTTGGACGCAAATTGCGCCCGAAACCATTAGGCCGAGGG CACGTCTTCCTGGGCGTCACGCATCGCGTCGCCCCCCGCACTCCGCGCCC AGAATCATGGACGCGGTGGTGTCGCGGGACGGATACTGGCCTCCCGTGCG CCCCGAGCATGCGGTTGGCCTAAATGCGAGTCCACGGCGACGGACGTCAC GACAAGTGGTGGTTGAAACTCAACTCTCGTAATGTCGCGGCTCCGACCCG TCGCACGTTTGGGCTCCACGACCCTTGTTGCGCTTAGACGCTCCGACCGC

Data in PlantAligDB


Total number of sequences: 9885

Number of families: 35

Families:
Acanthaceae
Amaryllidaceae
Apiaceae
Asparagaceae
Asteraceae
Brachytheciaceae
Brassicaceae
Campanulaceae
Cupressaceae
Ericaceae
Fabaceae
Fagaceae
Iridaceae
Lamiaceae
Lentibulariaceae
Liliaceae
Lophocoleaceae
Malvaceae
Melastomataceae
Moraceae
Musaceae
Orchidaceae
Orobanchaceae
Phyllanthaceae
Poaceae
Polygonaceae
Pottiaceae
Primulaceae
Rosaceae
Rubiaceae
Salicaceae
Theaceae
Violaceae
Zamiaceae
Zingiberaceae