Multiple sequence alignments and phylogenetic trees for plant families

The number of species represented in each alignment is indicated. Click on the number to visualize the alignment and phylogenetic tree.

The table describes the number of sequences for each region-family:
- The alignment and neighbor joining phylogenetic tree of each region-family were calculated in GENEIOUS.
- The trees were generated using Tamura-Nei model. Both phylogenetic trees and alignments can be refined in WASABI with PAGAN and PRANK.

Family	atpF-atpH	psbA-trnH	trnL CD	trnL GH	rbcL	matK	ITS	Number of Regions
Acanthaceae Wikipedia ToL Taxonomy		15		231		12	20	4
Aceraceae Wikipedia ToL Taxonomy		42		118				2
Actinidiaceae Wikipedia ToL Taxonomy				37		29		2
Adoxaceae Wikipedia ToL Taxonomy		81		14				2
Aizoaceae Wikipedia ToL Taxonomy				218		12		2
Alismataceae Wikipedia ToL Taxonomy		42				15		2
Amaranthaceae Wikipedia ToL Taxonomy				150		70		2
Amaryllidaceae Wikipedia ToL Taxonomy			18	440	19	150	920	5
Anacampserotaceae Wikipedia ToL Taxonomy						19		1
Anacardiaceae Wikipedia ToL Taxonomy				140	55			2
Ancistrocladaceae Wikipedia ToL Taxonomy						12		1
Aneuraceae Wikipedia ToL Taxonomy					11			1
Annonaceae Wikipedia ToL Taxonomy		129	87	670	289	23		5
Apiaceae Wikipedia ToL Taxonomy	11	99		188		12	1073	5
Apocynaceae Wikipedia ToL Taxonomy		58	22	810		76		4
Aquifoliaceae Wikipedia ToL Taxonomy				108				1
Araceae Wikipedia ToL Taxonomy	34		63	434	27	287		5
Araliaceae Wikipedia ToL Taxonomy		115		321		20		3
Araucariaceae Wikipedia ToL Taxonomy	15					10		2
Arecaceae Wikipedia ToL Taxonomy		24		300	53	237		4
Aristolochiaceae Wikipedia ToL Taxonomy				75		96		2
Asparagaceae Wikipedia ToL Taxonomy	24			159	27	159	95	5
Aspleniaceae Wikipedia ToL Taxonomy		11						1
Asteliaceae Wikipedia ToL Taxonomy				38				1
Asteraceae Wikipedia ToL Taxonomy	62	275	283	1955	126	603	1155	7
Begoniaceae Wikipedia ToL Taxonomy				97	24	31		3
Berberidaceae Wikipedia ToL Taxonomy	54			64		52		3
Betulaceae Wikipedia ToL Taxonomy		42		58		14		3
Bignoniaceae Wikipedia ToL Taxonomy				121				1
Boraginaceae Wikipedia ToL Taxonomy		102	27	405		24		4
Brachytheciaceae Wikipedia ToL Taxonomy							18	1
Brassicaceae Wikipedia ToL Taxonomy	14	16	176	1236		98	58	6
Bromeliaceae Wikipedia ToL Taxonomy				313		265		2
Bruniaceae Wikipedia ToL Taxonomy						63		1
Burseraceae Wikipedia ToL Taxonomy		62	20	69				3
Cactaceae Wikipedia ToL Taxonomy		15	84	449		278		4
Calceolariaceae Wikipedia ToL Taxonomy				12				1
Calycanthaceae Wikipedia ToL Taxonomy				12				1
Campanulaceae Wikipedia ToL Taxonomy	33			288		62	324	4
Canellaceae Wikipedia ToL Taxonomy				14				1
Cannabaceae Wikipedia ToL Taxonomy				22				1
Capparaceae Wikipedia ToL Taxonomy				22		50		2
Caprifoliaceae Wikipedia ToL Taxonomy		18		241	10	21		4
Caricaceae Wikipedia ToL Taxonomy				31				1
Caryophyllaceae Wikipedia ToL Taxonomy			28	189		96		3
Celastraceae Wikipedia ToL Taxonomy		26		265	55			3
Cephalotaxaceae Wikipedia ToL Taxonomy			13	13				2
Characeae Wikipedia ToL Taxonomy						10		1
Chloranthaceae Wikipedia ToL Taxonomy				51				1
Chrysobalanaceae Wikipedia ToL Taxonomy				10				1
Cleomaceae Wikipedia ToL Taxonomy						29		1
Clethraceae Wikipedia ToL Taxonomy				21				1
Clusiaceae Wikipedia ToL Taxonomy				17				1
Colchicaceae Wikipedia ToL Taxonomy	12	54		217		12		4
Combretaceae Wikipedia ToL Taxonomy		43						1
Convolvulaceae Wikipedia ToL Taxonomy		12		225	18			3
Coriariaceae Wikipedia ToL Taxonomy				10				1
Cornaceae Wikipedia ToL Taxonomy		39		16		10		3
Costaceae Wikipedia ToL Taxonomy				55				1
Crassulaceae Wikipedia ToL Taxonomy				177				1
Cucurbitaceae Wikipedia ToL Taxonomy		196		416	12			3
Cunoniaceae Wikipedia ToL Taxonomy				30				1
Cupressaceae Wikipedia ToL Taxonomy	17	17		133	17	23	118	6
Cyatheaceae Wikipedia ToL Taxonomy			11		56			2
Cycadaceae Wikipedia ToL Taxonomy						10		1
Cyperaceae Wikipedia ToL Taxonomy	28	42		591				3
Dicranaceae Wikipedia ToL Taxonomy		11						1
Didiereaceae Wikipedia ToL Taxonomy						11		1
Dioscoreaceae Wikipedia ToL Taxonomy		51		62		33		3
Dipterocarpaceae Wikipedia ToL Taxonomy				169				1
Droseraceae Wikipedia ToL Taxonomy					14			1
Ebenaceae Wikipedia ToL Taxonomy				130		86		2
Elaeagnaceae Wikipedia ToL Taxonomy				23				1
Elaeocarpaceae Wikipedia ToL Taxonomy				65				1
Ephedraceae Wikipedia ToL Taxonomy		21		18		12		3
Ericaceae Wikipedia ToL Taxonomy			10	344	27	192	93	5
Eriocaulaceae Wikipedia ToL Taxonomy			33					1
Escalloniaceae Wikipedia ToL Taxonomy		37						1
Euphorbiaceae Wikipedia ToL Taxonomy			39	796	12	179		4
Fabaceae Wikipedia ToL Taxonomy		358	232	2599		1476	49	5
Fagaceae Wikipedia ToL Taxonomy		10		89	22	56	163	5
Fissidentaceae Wikipedia ToL Taxonomy	11	12						2
Frullaniaceae Wikipedia ToL Taxonomy		114						1
Gentianaceae Wikipedia ToL Taxonomy		47		406				2
Geraniaceae Wikipedia ToL Taxonomy				160		14		2
Gesneriaceae Wikipedia ToL Taxonomy		213	21	556		135		4
Gnetaceae Wikipedia ToL Taxonomy			13			12		2
Goodeniaceae Wikipedia ToL Taxonomy			13	164				2
Grossulariaceae Wikipedia ToL Taxonomy		42						1
Haemodoraceae Wikipedia ToL Taxonomy				51				1
Haloragaceae Wikipedia ToL Taxonomy						78		1
Hamamelidaceae Wikipedia ToL Taxonomy		19		47	11	33		4
Hippocastanaceae Wikipedia ToL Taxonomy						13		1
Hyacinthaceae Wikipedia ToL Taxonomy		21		260		20		3
Hydrangeaceae Wikipedia ToL Taxonomy		34		14		23		3
Hydrocharitaceae Wikipedia ToL Taxonomy						12		1
Hymenophyllaceae Wikipedia ToL Taxonomy		14						1
Hypnaceae Wikipedia ToL Taxonomy					28			1
Hypoxidaceae Wikipedia ToL Taxonomy				47		11		2
Iridaceae Wikipedia ToL Taxonomy	22	61	15	518		210	350	6
Isoetaceae Wikipedia ToL Taxonomy				14				1
Jamesoniellaceae Wikipedia ToL Taxonomy		30						1
Juglandaceae Wikipedia ToL Taxonomy		18		20				2
Juncaceae Wikipedia ToL Taxonomy			48	90				2
Lamiaceae Wikipedia ToL Taxonomy		84	22	707		178	20	5
Lardizabalaceae Wikipedia ToL Taxonomy				18				1
Lauraceae Wikipedia ToL Taxonomy		36		56	21	52		4
Lecythidaceae Wikipedia ToL Taxonomy				110				1
Lejeuneaceae Wikipedia ToL Taxonomy		77						1
Lentibulariaceae Wikipedia ToL Taxonomy				18		75	30	3
Leucobryaceae Wikipedia ToL Taxonomy					24	16		2
Liliaceae Wikipedia ToL Taxonomy	37		15	160		129	416	5
Limnanthaceae Wikipedia ToL Taxonomy				19				1
Linaceae Wikipedia ToL Taxonomy		16		59	22			3
Linderniaceae Wikipedia ToL Taxonomy						12		1
Loasaceae Wikipedia ToL Taxonomy		10		119		65		3
Loganiaceae Wikipedia ToL Taxonomy				19				1
Lophocoleaceae Wikipedia ToL Taxonomy							24	1
Loranthaceae Wikipedia ToL Taxonomy		12		79				2
Lowiaceae Wikipedia ToL Taxonomy				15				1
Lycopodiaceae Wikipedia ToL Taxonomy				39				1
Lygodiaceae Wikipedia ToL Taxonomy				14				1
Lythraceae Wikipedia ToL Taxonomy				39		23		2
Magnoliaceae Wikipedia ToL Taxonomy		23	10	48		73		4
Malpighiaceae Wikipedia ToL Taxonomy				75	179	15		3
Malvaceae Wikipedia ToL Taxonomy			24	214		142	665	4
Marantaceae Wikipedia ToL Taxonomy				87		45		2
Marattiaceae Wikipedia ToL Taxonomy				41				1
Marcgraviaceae Wikipedia ToL Taxonomy				14				1
Melanthiaceae Wikipedia ToL Taxonomy	19		19	83		75		4
Melastomataceae Wikipedia ToL Taxonomy	23	20					922	3
Meliaceae Wikipedia ToL Taxonomy				39				1
Melianthaceae Wikipedia ToL Taxonomy				14				1
Menispermaceae Wikipedia ToL Taxonomy				96				1
Menyanthaceae Wikipedia ToL Taxonomy						35		1
Montiaceae Wikipedia ToL Taxonomy						37		1
Moraceae Wikipedia ToL Taxonomy	67	84		70			449	4
Musaceae Wikipedia ToL Taxonomy	36			29			70	3
Myodocarpaceae Wikipedia ToL Taxonomy				18				1
Myricaceae Wikipedia ToL Taxonomy				29				1
Myristicaceae Wikipedia ToL Taxonomy				14		13		2
Myrtaceae Wikipedia ToL Taxonomy		44		123		127		3
Nartheciaceae Wikipedia ToL Taxonomy				25		14		2
Nepenthaceae Wikipedia ToL Taxonomy				11		80		2
Nothofagaceae Wikipedia ToL Taxonomy				12				1
Nymphaeaceae Wikipedia ToL Taxonomy				53		33		2
Ochnaceae Wikipedia ToL Taxonomy				11				1
Oleaceae Wikipedia ToL Taxonomy		11	13	135	21	16		5
Onagraceae Wikipedia ToL Taxonomy				200				1
Orchidaceae Wikipedia ToL Taxonomy	21	68	40	1538	16	1038	51	7
Orobanchaceae Wikipedia ToL Taxonomy		24	57	320	12	102	10	6
Orthotrichaceae Wikipedia ToL Taxonomy		32						1
Osmundaceae Wikipedia ToL Taxonomy				15				1
Oxalidaceae Wikipedia ToL Taxonomy				246		12		2
Paeoniaceae Wikipedia ToL Taxonomy						29		1
Pallaviciniaceae Wikipedia ToL Taxonomy		10						1
Pandanaceae Wikipedia ToL Taxonomy				36				1
Paniceae Wikipedia ToL Taxonomy	28							1
Papaveraceae Wikipedia ToL Taxonomy				115		48		2
Passifloraceae Wikipedia ToL Taxonomy		31		170				2
Penaeaceae Wikipedia ToL Taxonomy		29						1
Pentaphylacaceae Wikipedia ToL Taxonomy				39		11		2
Phrymaceae Wikipedia ToL Taxonomy				119				1
Phyllanthaceae Wikipedia ToL Taxonomy						168	90	2
Pinaceae Wikipedia ToL Taxonomy	58	50	55		23	123		5
Piperaceae Wikipedia ToL Taxonomy		21		61	12	121		4
Pittosporaceae Wikipedia ToL Taxonomy				34				1
Plagiotheciaceae Wikipedia ToL Taxonomy					19			1
Plantaginaceae Wikipedia ToL Taxonomy	13			451		47		3
Plumbaginaceae Wikipedia ToL Taxonomy				26				1
Poaceae Wikipedia ToL Taxonomy	181	425	397	2078	107	476	830	7
Podocarpaceae Wikipedia ToL Taxonomy				102		13		2
Podostemaceae Wikipedia ToL Taxonomy				35		163		2
Polemoniaceae Wikipedia ToL Taxonomy				219				1
Polygalaceae Wikipedia ToL Taxonomy				275				1
Polygonaceae Wikipedia ToL Taxonomy		49	12	215	19	58	39	6
Potamogetonaceae Wikipedia ToL Taxonomy		34		49				2
Pottiaceae Wikipedia ToL Taxonomy		15					68	2
Primulaceae Wikipedia ToL Taxonomy	14	30		222		223	577	5
Proteaceae Wikipedia ToL Taxonomy				156		119		2
Pteridaceae Wikipedia ToL Taxonomy		17		11		18		3
Pylaisiadelphaceae Wikipedia ToL Taxonomy					29			1
Ranunculaceae Wikipedia ToL Taxonomy	19	114		343		279		4
Restionaceae Wikipedia ToL Taxonomy				217	96	241		3
Rhamnaceae Wikipedia ToL Taxonomy				159				1
Rosaceae Wikipedia ToL Taxonomy	22	228	21	766		273	581	6
Rubiaceae Wikipedia ToL Taxonomy	11	115	335	1427		42	49	6
Rutaceae Wikipedia ToL Taxonomy			17	186		152		3
Salicaceae Wikipedia ToL Taxonomy	11	11	17	124			176	5
Sapindaceae Wikipedia ToL Taxonomy				207		60		2
Sapotaceae Wikipedia ToL Taxonomy				84				1
Sarraceniaceae Wikipedia ToL Taxonomy						14		1
Saxifragaceae Wikipedia ToL Taxonomy		20	12	105		20		4
Schisandraceae Wikipedia ToL Taxonomy				33				1
Scrophulariaceae Wikipedia ToL Taxonomy			49	198		10		3
Sematophyllaceae Wikipedia ToL Taxonomy					24			1
Simaroubaceae Wikipedia ToL Taxonomy				15	30	57		3
Smilacaceae Wikipedia ToL Taxonomy				12				1
Solanaceae Wikipedia ToL Taxonomy		160	26	721		100		4
Sphagnaceae Wikipedia ToL Taxonomy		23				10		2
Stachyuraceae Wikipedia ToL Taxonomy				18				1
Stilbaceae Wikipedia ToL Taxonomy			13	15				2
Styracaceae Wikipedia ToL Taxonomy				22				1
Symplocaceae Wikipedia ToL Taxonomy				84		77		2
Tamaricaceae Wikipedia ToL Taxonomy		15						1
Taxaceae Wikipedia ToL Taxonomy			24	12	42	27		4
Theaceae Wikipedia ToL Taxonomy			19	82		30	98	4
Thesiaceae Wikipedia ToL Taxonomy				57				1
Thymelaeaceae Wikipedia ToL Taxonomy				202				1
Tofieldiaceae Wikipedia ToL Taxonomy				22		24		2
Typhaceae Wikipedia ToL Taxonomy				17				1
Ulmaceae Wikipedia ToL Taxonomy				12				1
Urticaceae Wikipedia ToL Taxonomy				117				1
Velloziaceae Wikipedia ToL Taxonomy				17				1
Verbenaceae Wikipedia ToL Taxonomy			38	161				2
Veroniceae Wikipedia ToL Taxonomy		62						1
Violaceae Wikipedia ToL Taxonomy	48	49		192		51	130	5
Vitaceae Wikipedia ToL Taxonomy		115	36	300				3
Winteraceae Wikipedia ToL Taxonomy				20				1
Xanthorrhoeaceae Wikipedia ToL Taxonomy				45	139	57		3
Zamiaceae Wikipedia ToL Taxonomy	64			55		26	89	4
Zingiberaceae Wikipedia ToL Taxonomy	16			120		171	65	4
Zygophyllaceae Wikipedia ToL Taxonomy				125				1

Multiple sequence alignments and phylogenetic trees for plant families

The number of species represented in each alignment is indicated. Click on the number to visualize the alignment and phylogenetic tree.

Acanthaceae

Aceraceae

Actinidiaceae

Adoxaceae

Aizoaceae

Alismataceae

Amaranthaceae

Amaryllidaceae

Anacampserotaceae

Anacardiaceae

Ancistrocladaceae

Aneuraceae

Annonaceae

Apiaceae

Apocynaceae

Aquifoliaceae

Araceae

Araliaceae

Araucariaceae

Arecaceae

Aristolochiaceae

Asparagaceae

Aspleniaceae

Asteliaceae

Asteraceae

Begoniaceae

Berberidaceae

Betulaceae

Bignoniaceae

Boraginaceae

Brachytheciaceae

Brassicaceae

Bromeliaceae

Bruniaceae

Burseraceae

Cactaceae

Calceolariaceae

Calycanthaceae

Campanulaceae

Canellaceae

Cannabaceae

Capparaceae

Caprifoliaceae

Caricaceae

Caryophyllaceae

Celastraceae

Cephalotaxaceae

Characeae

Chloranthaceae

Chrysobalanaceae

Cleomaceae

Clethraceae

Clusiaceae

Colchicaceae

Combretaceae

Convolvulaceae

Coriariaceae

Cornaceae

Costaceae

Crassulaceae

Cucurbitaceae

Cunoniaceae

Cupressaceae

Cyatheaceae

Cycadaceae

Cyperaceae

Dicranaceae

Didiereaceae

Dioscoreaceae

Dipterocarpaceae

Droseraceae

Ebenaceae

Elaeagnaceae

Elaeocarpaceae

Ephedraceae

Ericaceae

Eriocaulaceae

Escalloniaceae